| Protein ZmS1Fa1 | |
|---|---|
|
ZmS1Fa1 is a protein in the S1Fa-like family.
|
|
| Information | |
| TF Name: | ZmS1Fa1 |
| Species: | Maize |
| TF Family: | S1Fa-like |
| Gene Name(Synonym): | S1FA1 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmS1Fa1
ZmS1Fa1 is a protein in the S1Fa-like family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF04689 | |
| Zm00001eb084180_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d003822 | DAPseq |  |
sequence | fimo | position |
| Zm00001d003822 | DAPseq |  |
sequence | fimo | position |
| Zm00001d003822 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d003822 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmS1Fa1 is the regulator
Interactions where ZmS1Fa1 is the target
Expand
Zm00001eb084180_T001 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MADQFVDSANNVIIEEVNKGLNPGMVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE
MADQFVDSANNVIIEEVNKGLNPGMVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE
MADQFVDSANNVIIEEVNKGLNPGMVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE
MADQFVDSANNVIIEEVNKGLNPGMVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE
MADQFVDSANNVIIEEVNKGLNPGMVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF04689 |
|
| Hover here to show all domains | |
Nucleotide Sequence
Copy to clipboard
Expand
AACGGTGGACTAGAAACTTCCAAAT...
AACGGTGGACTAGAAACTTCCAAATCGAACGGCACACAAAAATCACAACCCGGAAAGGGACCAGCAGCGCAAAGGTGAGCGAGCTTTCCTTCGGAACTCAGAACTCTCGTGCTCACCTCATCCGTTCGACAAATCCACACGAATCCTCTGATTCAGAGCAGGGTGTTGGCATTGATCAGACGCCTGCCATGGCGGATCAGTTCGTGGATTCGGCGAACAATGTGATCATTGAGGAGGTGAACAAGGGCCTGAACCCAGGAATGGTGGTTCTGCTTGTGGTTGCAAGCTTCCTGCTGCTCTTCTTTGTGGGGAACTATGCGATGTATGTGTATGCGCAGAAGACGCTCCCGCCAAAGAAGAAGAAGCCGGTGTCGAAGAAGAAGCTGAAGAGGGAAAAGCTGAAGCAGGGGGTCTCTGCGCCGGGAGAGTAAACGGCCATGCTGCCGATCCTCCCGTCCAGAGCTCCTATTCACATGATTATTAAAGAAAAAAATTTATATATATATACCAGCTGGAGCCGTAGTGTTGGAGTAACTTTGTTCTGTAGATGCTCTGTCTTTAATGGTACATCTGTATTGGAGACTTTAATGGCCTGAGCCGAG
GRMZM2G056929_T01 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE
Nucleotide Sequence
Copy to clipboard
Expand
CTGGGCGACTCCGCCGCCGCCGAAA...
CTGGGCGACTCCGCCGCCGCCGAAAAACCACCAATTGCCCCCTCACCCCGCCGCCGCCGTTGCCTATCCGCACCACCTTTTCTCCTTCCTCTATCCTTCTCTTTCTCCATCTTGCGATTGAACCTCTGGCAGCATCGGCGCCATCCGGTCGGCGGCTGCGTGGATCCGGGGCCTCCAGAACAATGTGATCATTGAGGAGGTGAACAAGGGCCTGAACCCAGGAATGGTGGTTCTGCTTGTGGTTGCAAGCTTCCTGCTGCTCTTCTTTGTGGGGAACTATGCGATGTATGTGTATGCGCAGAAGACGCTCCCGCCAAAGAAGAAGAAGCCGGTGTCGAAGAAGAAGCTGAAGAGGGAAAAGCTGAAGCAGGGGGTCTCTGCGCCGGGAGAGTAAACGGCCATGCTGCCGATCCTCCCGTCCAGAGCTCCTATTCACATGATTATTAAAGAAAAAAATTTATATATATATACCAGCTGGAGCCGTAGTGTTGGAGTAACTTTGTTCTGTAGATGCTCTGTCTTTAATGGTACATCTGTATTGGAGACTTTAATGGCCTGAGCCGAGCTAGTATGCTTCCTGTTTCGTACAAGTTCTTGAAATGCTGGTGATGGCGCATGGCTCTAGAGAAAAACTCAAGGGAGCTGAGCCAGCGAAACATGATCTACCTCTACCTCTAGAGTTACCAACTATATGCAGTTTTAAGAGCTGCAGTAGTATTATTTTTGGAGTAA
GRMZM2G056929_T02 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MADQFVDSANNVIIEEVNKGLNPGMVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE
Nucleotide Sequence
Copy to clipboard
Expand
AAAGAAAAACGGTGGACTAGAAACT...
AAAGAAAAACGGTGGACTAGAAACTTCCAAATCGAACGGCACACAAAAATCACAACCCGGAAAGGGACCAGCAGCGCAAAGGTGAGCGAGCTTTCCTTCGGAACTCAGAACTCTCGTGCTCACCTCATCCGTTCGACAAATCCACACGAATCCTCTGATTCAGAGCAGGGTGTTGGCATTGATCAGACGCCTGCCATGGCGGATCAGTTCGTGGATTCGGCGAACAATGTGATCATTGAGGAGGTGAACAAGGGCCTGAACCCAGGAATGGTGGTTCTGCTTGTGGTTGCAAGCTTCCTGCTGCTCTTCTTTGTGGGGAACTATGCGATGTATGTGTATGCGCAGAAGACGCTCCCGCCAAAGAAGAAGAAGCCGGTGTCGAAGAAGAAGCTGAAGAGGGAAAAGCTGAAGCAGGGGGTCTCTGCGCCGGGAGAGTAAACGGCCATGCTGCCGATCCTCCCGTCCAGAGCTCCTATTCACATGATTATTAAAGAAAAAAATTTATATATATATACCAGCTGGAGCCGTAGTGTTGGAGTAACTTTGTTCTGTAGATGCTCTGTCTTTAATGGTACATCTGTATTGGAGACTTTAATGGCCTGAGCCGAGCTAGTATGCTTCCTGTTTCGTACAAGTTCTTGAAATGCTGGTGATGGCGCATGGCTCTAGAGAAAAACTCAAGGGAGCTGAGCCAGCGAAACATGATCTACCTCTACCTCTAGAGTTACCAACTATATGCAGTTTTAAGAGCTGCAGTAGTATTATTTTTGGAGTAA
Zm00001d003822_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MADQFVDSANNVIIEEVNKGLNPGMVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE
Nucleotide Sequence
Copy to clipboard
Expand
AAATTAAAGAAAAACGGTGGACTAG...
AAATTAAAGAAAAACGGTGGACTAGAAACTTCCAAATCGAACGGCACACAAAAATCACAACCCGGAAAGGGACCAGCAGCGCAAAGGTGAGCGAGCTTTCCTTCGGAACTCAGAACTCTCGTGCTCACCTCATCCGTTCGACAAATCCACACGAATCCTCTGATTCAGAGCAGGGTGTTGGCATTGATCAGACGCCTGCCATGGCGGATCAGTTCGTGGATTCGGCGAACAATGTGATCATTGAGGAGGTGAACAAGGGCCTGAACCCAGGAATGGTGGTTCTGCTTGTGGTTGCAAGCTTCCTGCTGCTCTTCTTTGTGGGGAACTATGCGATGTATGTGTATGCGCAGAAGACGCTCCCGCCAAAGAAGAAGAAGCCGGTGTCGAAGAAGAAGCTGAAGAGGGAAAAGCTGAAGCAGGGGGTCTCTGCGCCGGGAGAGTAAACGGCCATGCTGCCGATCCTCCCGTCCAGAGCTCCTATTCACATGATTATTAAAGAAAAAAATTTATATATATATACCAGCTGGAGCCGTAGTGTTGGAGTAACTTTGTTCTGTAGATGCTCTGTCTTTAATGGTACATCTGTATTGGAGACTTTAATGGCCTGAGCCGAGCTAGTATGCTTCCTGTTTCGTACAAGTTCTTGAAATGCTGGTGATGGCGCATGGCTCTAGAGAAAAACTCAAGGGAGCTGAGCCAGCGAAACATGATCTACCTCTACCTCTAGAGTTACCAACTATATGCAGTTTTAAGAGCTGCAGTAGTATTATTTTTGGAGTAACTCTTATGTTACTTTGAAATCCTTAAAAAACAAACAATTTAGACATGGAGT
Copyright © 2023 Grassius.org | Last updated: 2023-06-26